An aquatic ecosystem is an ecosystem in a body of water. Communities of organisms that are dependent on each other and on their environment live in aquatic ecosystems. The two main types of aquatic ecosystems are marine ecosystems and freshwater ecosystems.

Aquatic ecosystems include oceans, lakes, rivers, streams, estuaries, and wetlands. Within these aquatic ecosystems are living things that depend on the water for survival, such as fish, plants, and microorganisms. These ecosystems are very fragile and can be easily disturbed by pollution.